Package index • AutoSpectral

All functions

calculate.condition.number(): Calculate Condition Number
calculate.hotspot.matrix(): Calculate Hotspot Matrix
calculate.weights(): Calculate Weights
check.channels(): Check Channels
check.control.file(): Check Control File
clean.controls(): Clean Controls
cosine.similarity.plot(): Cosine Similarity Plot
cosine.similarity(): Calculate Cosine Similarity
create.biplot(): Create Biplot
create.control.file(): Create Control File
create.directory(): Create Directory
create.heatmap(): Create Heatmap Plot
create.parallel.lapply(): Create Parallel Lapply
define.flow.control(): Define Flow Control
do.gate.af(): Perform Gating on Autofluorescence Parameters
do.gate(): Do Gate
do.peacoQC(): Perform Quality Control on Flow Cytometry Data using PeacoQC
.new_issue(): New Issue
downsample.control(): Downsample Control Data
fit.af.spline(): Fit Spline to Autofluorescence Data
fit.robust.linear.model(): Fit Robust Linear Model
gate.af.identify.plot(): Plot Autofluorescence Identification Gate
gate.af.sample.plot(): Plot Gate Autofluorescence Sample
gate.define.plot(): Gate Definition Plot
gate.sample.plot(): Plot Pre-defined Gate on Sample
get.af.spectra(): Get Autofluorescence Spectra
get.autospectral.param.a5se(): Get AutoSpectral Parameters for the FACSymphony A5SE Cytometer
get.autospectral.param.a8(): Get Autospectral Parameters for DiscoverA8 Cytometer
get.autospectral.param.aurora(): Get Autospectral Parameters for Aurora Cytometer
get.autospectral.param.auroraNL(): Get Autospectral Parameters for the Aurora Northern Lights Cytometer
get.autospectral.param.id7000(): Get Autospectral Parameters for ID7000 Cytometer
get.autospectral.param.minimal(): Get Minimal Autospectral Parameters
get.autospectral.param.mosaic(): Get Autospectral Parameters for Mosaic Cytometer
get.autospectral.param.opteon(): Get Autospectral Parameters for Opteon Cytometer
get.autospectral.param(): Get AutoSpectral Parameters
get.autospectral.param.s8(): Get Autospectral Parameters for DiscoverS8 Cytometer
get.autospectral.param.xenith(): Get Autospectral Parameters for Xenith Cytometer
get.density.palette(): Get Density Color Palette
get.fluor.variants(): Get Fluorophore Variants
get.fluorophore.spectra(): Get Fluorophore Spectra
get.gated.flow.expression.data(): Get Gated Flow Expression Data
get.spectral.variants(): Get Spectral Variations for Fluorophores
get.ungated.flow.expression.data(): Get Ungated Flow Expression Data
get.universal.negative(): Get Universal Negative Control
match.fluorophores(): Match Fluorophores
match.markers(): Match Markers
parallel.backend(): Parallel Backend
read.bd.spectra(): Extract Spectra From BD FCS File
read.channel(): Read Channel Information
read.scatter.parameter(): Read Scatter Parameters
read.spectra(): Read In Saved Spectra
read.spectroflo.expt(): Extract Spectra From SpectroFlo Expt File
reload.flow.control(): Reload Flow Control Information
remove.af(): Remove Autofluorescence Contamination
run.af.removal(): Run Autofluorescence Removal
run.downsample(): Run Downsample
run.peacoQC(): Run PeacoQC
run.trim.events(): Run Trim Events
run.universal.negative(): Run Universal Negative
sample.fcs.file(): Sample FCS File
save.unmixing.matrix(): Save Unmixing Matrix
scatter.match.plot(): Plot Scatter-Matching of Universal Negative
spectral.heatmap(): Spectral Heatmap
spectral.ribbon.plot(): Spectral Ribbon Plot
spectral.trace(): Plot Fluorophore Spectra Traces
spectral.variant.plot(): Spectral Variant Plot
trim.extreme.events(): Trim Extreme Events
unmix.autospectral(): Unmix AutoSpectral
unmix.fcs(): Unmix FCS Data
unmix.folder(): Unmix All FCS Files in a Directory
unmix.ols(): unmix.ols
unmix.poisson(): Unmix Using Poisson Regression
unmix.wls(): Unmix Using Weighted Least Squares
validate.control.file(): Validate Control File