Package index • AutoSpectral

All functions
`calculate.condition.number()`	Calculate Condition Number
`check.control.file()`	Check Control File
`check.critical()`	check.critical
`clean.controls()`	Clean Controls
`convergence.plot()`	Convergence Plot
`cosine.similarity.plot()`	Cosine Similarity Plot
`cosine.similarity()`	Calculate cosine similarity
`create.biplot()`	Create Biplot
`create.control.file()`	Create Control File
`create.directory()`	Create Directory
`create.heatmap()`	Create Heatmap Plot
`define.flow.control()`	Define Flow Control
`do.gate.af()`	Perform Gating on Autofluorescence Parameters
`do.gate()`	Do Gate
`do.peacoQC()`	Perform Quality Control on Flow Cytometry Data using PeacoQC
`downsample.control()`	Downsample Control Data
`estimate.spread()`	Estimate Spread
`fit.af.spline()`	Fit Spline to Autofluorescence Data
`fit.robust.linear.model()`	Fit Robust Linear Model
`gate.af.identify.plot()`	Plot Autofluorescence Identification Gate
`gate.af.plot()`	Plot Autofluorescence Gate
`gate.af.sample.plot()`	Plot Gate Autofluorescence Sample
`gate.define.plot()`	Gate Definition Plot
`gate.sample.plot()`	Plot Pre-defined Gate on Sample
`get.af.spectra()`	Get Autofluorescence Spectra
`get.autospectral.param.a8()`	Get Autospectral Parameters for DiscoverA8 Cytometer
`get.autospectral.param.aurora()`	Get Autospectral Parameters for Aurora Cytometer
`get.autospectral.param.id7000()`	Get Autospectral Parameters for ID7000 Cytometer
`get.autospectral.param.minimal()`	Get Minimal Autospectral Parameters
`get.autospectral.param.opteon()`	Get Autospectral Parameters for Opteon Cytometer
`get.autospectral.param()`	Get Autospectral Parameters
`get.autospectral.param.s8()`	Get Autospectral Parameters for DiscoverS8 Cytometer
`get.density.palette()`	Get Density Color Palette
`get.fluor.variants()`	Get Fluorophore Variants
`get.fluorophore.spectra()`	Get Fluorophore Spectra
`get.gated.flow.expression.data()`	Get Gated Flow Expression Data
`get.spectral.variants()`	Get Spectral Variations for Fluorophores
`get.ungated.flow.expression.data()`	Get Ungated Flow Expression Data
`get.universal.negative()`	Get Universal Negative Control
`get.unmixing.error()`	Calculate Unmixing Error
`lapply.sequential()`	Sequential lapply
`match.fluorophores()`	Match Fluorophores
`read.bd.spectra()`	Read BD FCS Spectra
`read.channel()`	Read Channel Information
`read.scatter.parameter()`	Read Scatter Parameters
`read.spectra()`	Read Spectra
`read.spectroflo.expt()`	read.spectroflo.expt
`refine.unmixing.log.plot()`	Plot Density of Log Values
`refine.unmixing.log.plot.together()`	Plot Density of Log Values Together
`refine.unmixing()`	Refine Unmixing
`reload.flow.control()`	Reload Flow Control Information
`remove.af()`	Remove Autofluorescence Contamination
`run.af.removal()`	Run Autofluorescence Removal
`run.downsample()`	Run Downsample
`run.peacoQC()`	Run PeacoQC
`run.trim.events()`	Run Trim Events
`run.universal.negative()`	Run Universal Negative
`sample.fcs.file()`	Sample FCS File
`scatter.match.plot()`	Plot Scatter-Matching of Universal Negative
`spectral.heatmap()`	Spectral Heatmap
`spectral.ribbon.plot()`	Spectral Ribbon Plot
`spectral.trace()`	Plot Fluorophore Spectra Traces
`spectral.variant.plot()`	Spectral Variant Plot
`trim.extreme.events()`	Trim Extreme Events
`unmix.autospectral()`	Unmix AutoSpectral
`unmix.fcs()`	Unmix FCS Data
`unmix.folder()`	Unmix All FCS Files in a Directory
`unmix.ols()`	unmix.ols
`unmix.poisson()`	Unmix Using Poisson Regression
`unmix.wls()`	Unmix Using Weighted Least Squares

Reference

All functions