This function plots the autofluorescence exclusion gate on the sample(s).
Usage
gate.af.sample.plot(
plot.data,
samp,
af.boundary.upper,
asp,
max.points = 50000,
color.palette = "viridis"
)Arguments
- plot.data
Matrix containing autofluorescence data points.
- samp
Sample identifier.
- af.boundary.upper
Matrix containing upper boundary information.
- asp
The AutoSpectral parameter list. Prepare using
get.autospectral.param- max.points
Number of points to plot (speeds up plotting). Default is
5e4.- color.palette
Optional character string defining the viridis color palette to be used for the fluorophore traces. Default is
viridis. Options are the viridis color options:magma,inferno,plasma,viridis,cividis,rocket,makoandturbo.