Plot Gate Autofluorescence Sample

This function plots the gate autofluorescence sample, including upper and lower boundaries, using ggplot2 and other necessary packages.

gate.af.sample.plot(
  plot.data,
  samp,
  af.boundary.upper,
  asp,
  max.points = 1e+05,
  color.palette = "viridis"
)

Arguments

plot.data

Matrix containing autofluorescence data points.

samp

Sample identifier.

af.boundary.upper

Matrix containing upper boundary information.

asp

The AutoSpectral parameter list. Prepare using get.autospectral.param

max.points

Number of points to plot (speeds up plotting). Default is 1e5.

color.palette

Optional character string defining the viridis color palette to be used for the fluorophore traces. Default is viridis. Options are the viridis color options: magma, inferno, plasma, viridis, cividis, rocket, mako and turbo.

Value

Saves the plot as a JPEG file in the specified directory.