This function plots the gate autofluorescence sample, including upper and lower boundaries, using ggplot2 and other necessary packages.
Usage
gate.af.sample.plot(
plot.data,
samp,
af.boundary.upper,
asp,
max.points = 1e+05,
color.palette = "viridis"
)Arguments
- plot.data
Matrix containing autofluorescence data points.
- samp
Sample identifier.
- af.boundary.upper
Matrix containing upper boundary information.
- asp
The AutoSpectral parameter list. Prepare using
get.autospectral.param- max.points
Number of points to plot (speeds up plotting). Default is
1e5.- color.palette
Optional character string defining the viridis color palette to be used for the fluorophore traces. Default is
viridis. Options are the viridis color options:magma,inferno,plasma,viridis,cividis,rocket,makoandturbo.