This function plots the gate during the definition step, including boundaries and regions.
Usage
gate.define.plot(
samp,
gate.data,
gate.marker,
gate.bound,
gate.region,
gate.population,
scatter.and.channel.label,
asp,
color.palette = "rainbow"
)Arguments
- samp
Sample identifier.
- gate.data
Matrix containing gate data points.
- gate.marker
Vector containing gate marker names.
- gate.bound
List containing gate boundary information.
- gate.region
List containing gate region information.
- gate.population
List containing gate population information.
- scatter.and.channel.label
Named vector mapping scatter and channel labels.
- asp
The AutoSpectral parameter list. Prepare using
get.autospectral.param- color.palette
Optional character string defining the viridis color palette to be used for the fluorophore traces. Default is
rainbow, which will be similar to FlowJo or SpectroFlo. Other pptions are the viridis color options:magma,inferno,plasma,viridis,cividis,rocket,makoandturbo.