Get Gated Flow Expression Data

Source: R/get_gated_flow_expression_data.R

Retrieves gated flow cytometry expression data for specified samples, removing out-of-range events and applying gating boundaries.

get.gated.flow.expression.data(
  samp,
  file.name,
  control.dir,
  scatter.and.spectral.channel,
  spectral.channel,
  set.resolution,
  flow.gate,
  gate.list,
  scatter.param,
  scatter.and.channel.label,
  asp
)

Arguments

samp

The sample identifier.

file.name

A vector of file names for the samples.

control.dir

The directory containing the control files.

scatter.and.spectral.channel

A vector of scatter and spectral channels.

spectral.channel

A vector of spectral channels.

set.resolution

The resolution limit for the spectral channels.

flow.gate

A list of flow gates for the samples.

gate.list

A list of gating boundaries.

scatter.param

A vector of scatter parameters.

scatter.and.channel.label

A label for scatter and channel.

asp

The AutoSpectral parameter list. Prepare using get.autospectral.param

Value

A matrix with the gated expression data.