Get Gated Flow Expression Data — get.gated.flow.expression.data • AutoSpectral

Retrieves gated flow cytometry expression data for specified samples, removing out-of-range events and applying gating boundaries.

Usage

get.gated.flow.expression.data(
  samp,
  file.name,
  control.dir,
  scatter.and.spectral.channel,
  spectral.channel,
  set.resolution,
  flow.gate,
  gate.list,
  scatter.param,
  scatter.and.channel.label,
  asp
)

Arguments

samp: The sample identifier.
file.name: A vector of file names for the samples.
control.dir: The directory containing the control files.
scatter.and.spectral.channel: A vector of scatter and spectral channels.
spectral.channel: A vector of spectral channels.
set.resolution: The resolution limit for the spectral channels.
flow.gate: A list of flow gates for the samples.
gate.list: A list of gating boundaries.
scatter.param: A vector of scatter parameters.
scatter.and.channel.label: A label for scatter and channel.
asp: The AutoSpectral parameter list. Prepare using get.autospectral.param

Value

A matrix with the gated expression data.