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Run PeacoQC

Source: R/run_peacoqc.R
run.peacoQC.Rd

This function runs PeacoQC to remove flow fluctuation errors from expression data using parallel processing if specified.

Usage

run.peacoQC(
  expr.data,
  spectral.channel,
  all.channels,
  asp,
  figures = TRUE,
  parallel = FALSE,
  threads = 1,
  verbose = TRUE
)

Arguments

expr.data

A list containing the expression data for each sample.

spectral.channel

A character vector specifying the spectral channels.

all.channels

A character vector specifying all channels.

asp

The AutoSpectral parameter list. Prepare using get.autospectral.param

figures

Logical, if TRUE creates the main figures to show the impact of intrusive autofluorescent event removal and scatter-matching for the negatives.

parallel

Logical, default is FALSE, in which case parallel processing will not be used. Set to TRUE to run in parallel.

threads

Number of cores to use for parallel processing, default is 1.

verbose

Logical, default is TRUE. Set to FALSE to suppress messages.

Value

A list containing the cleaned expression data for each sample.