Run PeacoQC

Source: R/run_peacoqc.R

This function runs PeacoQC to remove flow fluctuation errors from expression data using parallel processing if specified.

run.peacoQC(
  expr.data,
  spectral.channel,
  all.channels,
  asp,
  figures = TRUE,
  parallel = FALSE,
  verbose = TRUE
)

Arguments

expr.data

A list containing the expression data for each sample.

spectral.channel

A character vector specifying the spectral channels.

all.channels

A character vector specifying all channels.

asp

The AutoSpectral parameter list. Prepare using get.autospectral.param

figures

Logical, if TRUE creates the main figures to show the impact of intrusive autofluorescent event removal and scatter-matching for the negatives.

parallel

Logical, default is FALSE, in which case parallel processing will not be used. Parallel processing will likely be faster when many small files are read in. If the data is larger, parallel processing may not accelerate the process much.

verbose

Logical, default is TRUE. Set to FALSE to suppress messages.

Value

A list containing the cleaned expression data for each sample.