Plot Pre-defined Gate on Sample — gate.sample.plot • AutoSpectral

This function plots a pre-defined gate on a sample, using ggplot2 and other necessary packages.

gate.sample.plot(
  samp,
  gate.data,
  gate.marker,
  gate.boundary,
  scatter.and.channel.label,
  control.type,
  asp
)

Arguments

samp: Sample identifier.
gate.data: Matrix containing gate data points.
gate.marker: Vector containing gate marker names.
gate.boundary: List containing gate boundary information.
scatter.and.channel.label: Named vector mapping scatter and channel labels.
control.type: Type of control: beads or cells
asp: The AutoSpectral parameter list. Prepare using get.autospectral.param

Saves the plot as a JPEG file in the specified directory.