Check Control File

Attempts to find potential failure points and input errors in the control file control.def.file used to define the single-stained control setup for AutoSpectral.

check.control.file(control.dir, control.def.file, asp, strict = FALSE)

Arguments

control.dir

File path to the single-stained control FCS files.

control.def.file

CSV file defining the single-color control file names, fluorophores they represent, marker names, peak channels, and gating requirements.

asp

The AutoSpectral parameter list defined using get.autospectral.param.

strict

Logical. Controls whether the function triggers a break or continues and outputs a list of errors. Default is FALSE.

Value

A named list of errors and warnings intended to help the user fix problems with the control.def.file.