A helper function that dictates what occurs when a gating error is detected.
Usage
handle.gating.error(
e,
gate.id,
files.to.gate,
scatter.coords,
samp,
viability.gate,
control.type,
flow.scatter.and.channel.label,
asp
)Arguments
- e
The error object from tryCatch
- gate.id
The ID of the gate that failed
- files.to.gate
Character vector of filenames used
- scatter.coords
The data matrix used for gating
- samp
String identifier for the sample/gate type
- viability.gate
Logical, is this a viability gate
- control.type
"beads" or "cells"
- flow.scatter.and.channel.label
Mapping vector for axis labels
- asp
The parameter list